BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB030H10SP1|AL429304
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig740 1715 0.0
>3x_Contig740
Length = 2091
Score = 1715 bits (863), Expect = 0.0
Identities = 873/877 (99%), Gaps = 1/877 (0%)
Strand = Plus / Minus
Query: 1 gatccgaatcttagtcacacccccgctaggaacgacttttgattacaaaagattaatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 gatccgaatcttagtcacacccccgctaggaacgacttttgattacaaaagattaatcct 1206
Query: 61 ccattgtaactggtcaaataatacaagaaattgatacataatgtccgcagtttt-gaaat 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1205 ccattgtaactggtcaaataatacaagaaattgatacataatgtccgcagtttttgaaat 1146
Query: 120 ctaagttgaaggtagctttagttcagttagcaggatcttcgcctgacaagagtgcgaatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 ctaagttgaaggtagctttagttcagttagcaggatcttcgcctgacaagagtgcgaatt 1086
Query: 180 tgagcagagccgctcaattcgttgctaaagccatggatgcacaaccggatacgaaactgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 tgagcagagccgctcaattcgttgctaaagccatggatgcacaaccggatacgaaactgg 1026
Query: 240 ttgtgttaccagaatttttcaacgctccatatgcagttgataagttcagagaatatgccg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 ttgtgttaccagaatttttcaacgctccatatgcagttgataagttcagagaatatgccg 966
Query: 300 aagtaatcacacctgacgcgacawcggtgaaagcgttatctgagattgctcgcaaatgga 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 965 aagtaatcacacctgacgcgacatcggtgaaagcgttatctgagattgctcgcaaatgga 906
Query: 360 aagtcacactagttggtggttccatcccagagctagaaccttctacagacaaaatatata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 aagtcacactagttggtggttccatcccagagctagaaccttctacagacaaaatatata 846
Query: 420 acacgtctcttatctttaatgaagatggtgagatcattggcacacatcgtaaagcacatc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 acacgtctcttatctttaatgaagatggtgagatcattggcacacatcgtaaagcacatc 786
Query: 480 ttttcgatattgatattccaaatggtatcactttcaaggaatccgttactctatctggtg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttttcgatattgatattccaaatggtatcactttcaaggaatccgttactctatctggtg 726
Query: 540 ggaacaaaaatacgttgattgatgatccaaagatcggtaaatttggtgtcggtatctgtt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggaacaaaaatacgttgattgatgatccaaagatcggtaaatttggtgtcggtatctgtt 666
Query: 600 acgatatgagatttccggaacttgctatggttagtgccagamaaggtgcatttgctatga 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 acgatatgagatttccggaacttgctatggttagtgccagaaaaggtgcatttgctatga 606
Query: 660 tttatccaagtgctttcaacactaccaccggtccaatgcactggcaccttttggccagat 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttatccaagtgctttcaacactaccaccggtccaatgcactggcaccttttggccagat 546
Query: 720 ctcgtagtatcgacaacgagatttataccatcttgtgctcaccagctagaagtgggggct 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctcgtagtatcgacaacgagatttataccatcttgtgctcaccagctagaagtgggggct 486
Query: 780 ctggttatcaggcttatggtcatagtttggtggttaatccaagaggtgaaatcattgcag 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctggttatcaggcttatggtcatagtttggtggttaatccaagaggtgaaatcattgcag 426
Query: 840 aagctggtgaaggtgaagagatygtatacgccgaatt 876
|||||||||||||||||||||| ||||||||||||||
Sbjct: 425 aagctggtgaaggtgaagagatcgtatacgccgaatt 389
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5711
Number of Sequences: 1807
Number of extensions: 5711
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)